So I got some more information from seijurou by PM, and did quite a lot of internet sleuthing, so I have a bit more information now about the items marked with red boxes.
From top left to bottom right:
Spanish Majora's Mask Nintendo Club Promotional Book & Mask - A promotional letter sent to subscribers of Spain's official Nintendo magazine (don't know the name) that also included a paper replica of Majora's Mask.
http://bingksjunk.blogspot.com/2012/...oras-mask.html (Scroll down to the "Miscellaneous" section)
Japanese Twilight Princess "Portfolio of the New Legend" art book - A magazine bonus from the August 2005 issue of Nintendo Dream (released 6/21/2005).
http://www.wheresdrew.com/blog/?p=387
French Wind Waker Press Kit - Promotional magazine and poster, origins unknown.
http://translate.google.com/translate?hl=en&sl=fr&u=http...
Spanish Wind Waker Gu?a DVD - A video strategy guide, origins unknown.
Soulcalibur II cel art print - Pre-order bonus exclusive to EB Games (US only?), limited to 27,100 units (released 8/27/2003).
25th Anniversary something or other - No clue what this is, origins unknown.
PM me or post a reply if you know anything more about these!